Dataset name in the downloadable filesSpeciesData type
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Applied metric
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Metric rangeData source
ath_colocalization_athaliana_tair_go_biomart_finalathSCLWMI0...0.7Gene Ontology (cellular compartment) (GO)
ath_pearson_atha_gse12404_seed_compartments_at_5_discrete_stagathMEXPLC-1...1Seed compartments at 5 discrete stages (Zuber et al.,2010)
ath_pearson_averx63_all_normalizedathMEXPLC-1...1Expression map of development (Schmid et al.,2005)
ath_ppi_intact_ath_2011athPPIPPI score0...1IntAct (Aranda et al., 2010)
ath_tf_cotarget_regulogs_tf_2_target_thalianaathTFBTF score0...10protein-DNA regulogs (Yu et al., 2004)
ath_unidomint_unidomint_pfamathDOMUniDomInt sum0.04...8.78Unification of domain-domain interactions (Bjorkholm&Sonnhammer, 2009)
cel_colocalization_celegans_wb_go_finalcelSCLWMI0...0.7Gene Ontology (cellular compartment) (GO)
cel_mirna_cotarget_mirbase_mirna_2_target_wormcelMIRmiRNA score0...2.5miRBase targets, v.17 (MicroCosm)
cel_pearson_cele_gse21012_toxicant_physiological_mode_of_actiocelMEXPLC-1...1Toxicant physiological mode of action (Swain et al.,2010)
cel_pearson_cele_gse2180_embryonic_timecourse_in_wt_and_mutantcelMEXPLC-1...1Time courses for 4 different genotypes (Baugh LR et al.,2011)
cel_pearson_cele_gse22383_insulin_like_signaling_stress_responcelMEXPLC-1...1Insulin-like signaling (McColl et al., 2011)
cel_ppi_intact_cel_2011celPPIPPI score0...1IntAct (Aranda et al., 2010)
cel_tf_cotarget_regulogs_tf_2_target_wormcelTFBTF score0...10protein-DNA regulogs (Yu et al., 2004)
cel_unidomint_unidomint_pfamcelDOMUniDomInt sum0.04...8.78Unification of domain-domain interactions (Bjorkholm&Sonnhammer, 2009)
cfa_colocalization_cfamiliaris_ensgene_go_biomart_finalcfaSCLWMI0...0.7Gene Ontology (cellular compartment) (GO)
cfa_mirna_cotarget_mirbase_mirna_2_target_dogcfaMIRmiRNA score0...2.5miRBase targets, v.17 (MicroCosm)
cfa_pearson_cfam_gse20113_canine_normal_tissuecfaMEXPLC-1...1Canine normal tissue (Briggs J.,2010)
cfa_pearson_cfam_gse23760_canine_hemangiosarcomacfaMEXPLC-1...1Distinguishing features of canine hemangiosarcoma (Beth, Tamburini, 2010)
cfa_unidomint_unidomint_pfamcfaDOMUniDomInt sum0.04...8.78Unification of domain-domain interactions (Bjorkholm&Sonnhammer, 2009)
cin_colocalization_cintestinalis_ensgene_go_biomart_finalcinSCLWMI0...0.7Gene Ontology (cellular compartment) (GO)
cin_unidomint_unidomint_pfamcinDOMUniDomInt sum0.04...8.78Unification of domain-domain interactions (Bjorkholm&Sonnhammer, 2009)
dme_colocalization_dmelanogaster_ensgene_go_finaldmeSCLWMI0...0.7Gene Ontology (cellular compartment) (GO)
dme_mirna_cotarget_mirbase_mirna_2_target_flydmeMIRmiRNA score0...2.5miRBase targets, v.17 (MicroCosm)
dme_pearson_dmel_gse11280_study_of_drosophila_cell_linesdmeMEXPLC-1...1Drosophila cell lines (Lucy Cherbas.,2009)
dme_pearson_dmel_gse11316_whole_genome_microarray_analysis_of_dmeMEXPLC-1...1Whole genome microarray analysis (Lebo MS et al.,2009)
dme_ppi_intact_dme_2011dmePPIPPI score0...1IntAct (Aranda et al., 2010)
dme_tf_cotarget_regulogs_tf_2_target_flydmeTFBTF score0...10protein-DNA regulogs (Yu et al., 2004)
dme_unidomint_unidomint_pfamdmeDOMUniDomInt sum0.04...8.78Unification of domain-domain interactions (Bjorkholm&Sonnhammer, 2009)
dre_colocalization_drerio_ensgene_go_finaldreSCLWMI0...0.7Gene Ontology (cellular compartment) (GO)
dre_mirna_cotarget_mirbase_mirna_2_target_zfishdreMIRmiRNA score0...2.5miRBase targets, v.17 (MicroCosm)
dre_pearson_drer_gse24616_zebrafish_developmetal_stagesdreMEXPLC-1...1Zebrafish developmetal stages (Domazet-Loso, 2010)
dre_unidomint_unidomint_pfamdreDOMUniDomInt sum0.04...8.78Unification of domain-domain interactions (Bjorkholm&Sonnhammer, 2009)
gga_colocalization_ggallus_ensgene_go_biomart_finalggaSCLWMI0...0.7Gene Ontology (cellular compartment) (GO)
gga_mirna_cotarget_mirbase_mirna_2_target_chickenggaMIRmiRNA score0...2.5miRBase targets, v.17 (MicroCosm)
gga_pearson_expdatagga_gse9745_valuesrawfinalggaMEXPLC-1...1Hepatic transcriptional profiling (Trakooljul et al.,2011)
gga_pearson_expdatagse10538_valueslognormggaMEXPLC-1...1Regulation of the early embryonic RPE (Sun R et al.,2008)
gga_unidomint_unidomint_pfamggaDOMUniDomInt sum0.04...8.78Unification of domain-domain interactions (Bjorkholm&Sonnhammer, 2009)
hsa_colocalization_hsapiens_ensgene_go_finalhsaSCLWMI0...0.7Gene Ontology (cellular compartment) (GO)
hsa_mirna_cotarget_mirbase_mirna_2_target_humanhsaMIRmiRNA score0...2.5miRBase targets, v.17 (MicroCosm)
hsa_pearson_hsap_gse26440_derivation_of_septic_shockhsaMEXPLC-1...1Derivation of septic shock subgroups (Wong et al.,2009)
hsa_pearson_hsap_gse29288_9_different_cancer_tissueshsaMEXPLC-1...19 different cancer tissues (Reinhold WC et al.,2011)
hsa_ppi_intact_hsa_2011hsaPPIPPI score0...1IntAct (Aranda et al., 2010)
hsa_tf_cotarget_eel_mpromdb_tf_2_target_humanhsaTFBTF score0...10EEL: mammalian enhancers & MPromDb (Hallikas et al., 2006)
hsa_unidomint_unidomint_pfamhsaDOMUniDomInt sum0.04...8.78Unification of domain-domain interactions (Bjorkholm&Sonnhammer, 2009)
mmu_colocalization_mmusculus_ensgene_go_finalmmuSCLWMI0...0.7Gene Ontology (cellular compartment) (GO)
mmu_mirna_cotarget_mirbase_mirna_2_target_mousemmuMIRmiRNA score0...2.5miRBase targets, v.17 (MicroCosm)
mmu_pearson_mmus_gse10246_gnf_mouse_geneatlas_v3mmuMEXPLC-1...1GNF Mouse GeneAtlas v.3 (Lattin JE et al.,2011)
mmu_pearson_mmus_gse29685_coexpression_of_normally_incompatiblmmuMEXPLC-1...1Incompatible developmental pathways in retinoblastoma (McEvoy et al.,2011)
mmu_pearson_mmus_gse7404_longitudinal_leukocyte_gene_expressiommuMEXPLC-1...1Comparison of Longitudinal Leukocyte Gene Expression (Lederer et al., 2011)
mmu_ppi_intact_mmu_2011mmuPPIPPI score0...1IntAct (Aranda et al., 2010)
mmu_unidomint_unidomint_pfammmuDOMUniDomInt sum0.04...8.78Unification of domain-domain interactions (Bjorkholm&Sonnhammer, 2009)
rno_colocalization_rnorwegicus_ensgene_go_finalrnoSCLWMI0...0.7Gene Ontology (cellular compartment) (GO)
rno_mirna_cotarget_mirbase_mirna_2_target_ratrnoMIRmiRNA score0...2.5miRBase targets, v.17 (MicroCosm)
rno_pearson_rnor_gse23093_genes_vasculature_function_sensitivirnoMEXPLC-1...1Meninges and Associated Vasculature Function (Thomas, 2010)
rno_pearson_rnor_gse4776_thrivikraman_5p50mh058922_050002rnoMEXPLC-1...1Brain chemistry (Thrivikraman, 2011)
rno_ppi_intact_rno_2011rnoPPIPPI score0...1IntAct (Aranda et al., 2010)
rno_unidomint_unidomint_pfamrnoDOMUniDomInt sum0.04...8.78Unification of domain-domain interactions (Bjorkholm&Sonnhammer, 2009)
sce_colocalization_scereviciae_orf_go_finalsceSCLWMI0...0.7Gene Ontology (cellular compartment) (GO)
sce_pearson_gasch_filteredsceMEXPLC-1...1Expression in environmental changes (Gasch et al., 2000)
sce_pearson_scer_gse11452_chemostat_steady_state_microarray_cosceMEXPLC-1...1Steady-state chemostat cultures (Knijnenburg et al., 2011)
sce_pearson_scer_gse19116_xylose_utilization_timecoursesceMEXPLC-1...1Xylose utilization timecourse (Wenger JW, Schwartz K, Sherlock G.,2010)
sce_pearson_scer_gse5499_identifying_transcription_factor_funcsceMEXPLC-1...1Identifying transcription factor functions (Chua et al.,2006)
sce_pearson_scer_gse8561_mutant2sceMEXPLC-1...1Deletion-mutant strains (Aragon et al.)
sce_ppi_intact_sce_2011scePPIPPI score0...1IntAct (Aranda et al., 2010)
sce_tf_cotarget_regulogs_tf_2_target_yeastsceTFBTF score0...10protein-DNA regulogs (Yu et al., 2004)
sce_geni_simple_sgadata_correlationssceGINPLC-1...1synthetic lethality assay (Costanzo et al., 2010)
sce_unidomint_unidomint_pfamsceDOMUniDomInt sum0.04...8.78Unification of domain-domain interactions (Bjorkholm&Sonnhammer, 2009)